Just to help clarify a few things:
It's not a Pinto manifold. Almost surely it is a manifold from a SIV. It is quite common to use these SIV manifolds with Webers. The SIV had a similar 2 barrel (Solex) carb. But as noted, it typicaly requires a slight mod to the throat to match the Weber.
Also I went back at earlier posts to verify you have a 1725. You said the block has number B395016xxx. And you thought that meant "early" production. I do not see any implications for your present issues, but know that this is not an "early" block. It's more than 3/4 thru production, somewhere in June-Aug 1967.
Lastly , someone else suggested looking for manifold leaks, mainly at the block or possibly at the carb / manifold joint. As far as I can see such a leak would be the only way to account for the pooling of gas in the manifold.
Maybe the backfiring has blown the intake manifold gasket.
Tom
Folks it is highly unlikely that any automotive fuel pump (unless high volume electric) is going to have enough output to flood the engine at cranking speeds, most pumps run at 4-6psi and carb floats are designed to hold closed against this.
Manifold leaks will give lean mixtures not the other way round, by the way lean mixtures, wrong ignition timing and leaking valves will give you a backfire, but lets concentrate on the basics.
I would concentrate first on the carb, why, well the fact that it fires and attempts to run is enough of an indication that the ignition system is at least functional, whats not clear is why the engine is flooding with fuel; even with a poor ignition system the engine should not flood.
So can I suggest that you start by taking the plugs out, remove the coil wire, foot flat to the floor and crank the engine over for at least 10 seconds, this should clear any residual fuel from the manifold and cylinders; clean plugs and replace, refit the coil wire.
Now foot flat to the floor and keep it there, crank the engine and if it fires keep it running if you can, easing your foot back and see if you can keep it going, if it dies switch off and pull the plugs. Presuming it has flooded, even at high throttle settings the plugs will be black and sooty, and whilst its running you will see rich black smoke from the exhaust; just another thought, do this with the air cleaner removed.
Moving forward will depend on the outcome of the above.